PBN module documentation
========================


.. automodule:: bang.core.pbn.pbn
    :members:
    :member-order: groupwise

.. .. class:: PBN

..     Class representing Probabilistic Boolean Networks.

..     This class stores information about a Probabilistic Boolean Networks, parses informations about PBNs from files and formats data for simulation. 

..     :ivar int n: number of nodes.
..     :ivar list[int] nf: number of boolean functions for each node.
..     :ivar list[int] nv: number of variables for each boolean function.
..     :ivar list[list[bool]] F: truth table of each boolean function.
..     :ivar list[list[int]] varFInt: number of node each variable of boolean function references
..     :ivar list[list[float]] cij: probability of each boolean function to be picked.
..     :ivar float perturbation: perturbation rate.
..     :ivar list[int] npNode: index of nodes without perturbation

..     Methods:
..     --------

..     .. py:function:: load_from_file(path, format='sbml') -> PBN
    
..         Loads file of a given format from path and creates object of class PBN from it.
..         (sbml files are still WIP)

..         :param path: path to the file.
..         :type path: str
..         :param format: format of the file. Can be 'sbml' for .sbml files or 'assa' for .pbn files. Devaults to '.sbml'
..         :type format: str

..     .. autofun